#ifndef SEEDING_H
#define SEEDING_H

#include <vector>
#include <string>

#include "Match.h"
#include "Sequence.h"

class Seeding
{
    public:
        Seeding(int seed1);
        virtual ~Seeding();
        void get_matches(std::vector<Match> &matches, std::vector<Sequence> &short1, std::vector<Sequence> &long1);
    protected:
    private:
        int seed;
        std::string RC(std::string seq);
};

#endif // SEEDING_H
